PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF025700030CFD_t1
Common NameTRAES_3BF025700030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 274aa    MW: 29975.9 Da    PI: 7.5595
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF025700030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.31.8e-31191102102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F+ k++ +++d++++ +++w   +nsfvv d+ +f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h sF 
  TRAES3BF025700030CFD_t1  19 FVAKTFAMVDDPATDAVVRWGPASNSFVVADPFTFSHALLPAHFKHANFSSFVRQLNTYGFRKVDPDR---------WEFAHASFL 95 
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+++ll +i r++s
  TRAES3BF025700030CFD_t1  96 RGQTHLLPRIVRRRS 110
                              **********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-4815108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3115108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-3516108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-171942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2819108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-175769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSGAGGMECS GSGGTVAPFV AKTFAMVDDP ATDAVVRWGP ASNSFVVADP FTFSHALLPA  60
HFKHANFSSF VRQLNTYGFR KVDPDRWEFA HASFLRGQTH LLPRIVRRRS GGKGGKEDAD  120
GEEDEDISSK MLAMEVVRLK EEQRATEDRL ASMRRRVQDA ERRPKLMLAF LLKVVGDPDV  180
LRRLVGNSSC GGGLFPGEGA EAKRPRLLLD GEVQVGKKKM RVDGDGLSCG INRQEAFVRE  240
PRVDFTGFYT GGDGFSDVPV ANDLPYAFPV DTGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-24510810129Heat shock factor protein 1
5d5v_B6e-24510810129Heat shock factor protein 1
5d5v_D6e-24510810129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571145.12e-94PREDICTED: heat stress transcription factor C-2a-like
SwissprotQ6EUG49e-94HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLW5D3710.0W5D371_WHEAT; Uncharacterized protein
STRINGMLOC_68417.16e-96(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-62heat shock transcription factor C1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]